Friday, January 30, 2015

Ancient DNA and me

Over on Gedmatch you can compare your autosomal DNA raw data with ancient DNA. More about the types of ancient DNA and some other nifty tools you can use can be found here.

So I tested all five of my profiles at gedmatch. Not one snp matched, even on the lowest setting on comparison directly. You get a graph on the other function there, but all it looks like to me is a whole bunch of orange lines. So I decided to use the ancient calculator that Feliz Immanuel wrote and test our DNA that way.

Here are the results. I arranged them sort of higher to lower matching. The number is the percent of DNA that matches.



Ancient DNA ME JM SH DAD MOM
Ne 1 20.09 21.46 21.04 20.16 21.34
usht ishm 16.64 17.04 17.09 16.99 17.93
loschbour 16.92 16.32 17.36 17.5 15.34
linearbandkeramik 20.35 20.04 20.07 21.16 19.69
clovis 12.59 13.52 11.3 12 14.03
br2 22.65 21.62 20.94 21.73 23.29
kostenki14 5.7 5.35 4.83 5.12 5.34
motala 12 6.12 5.66 5.26 6.16 5.31
australian aboriginal 1.01 1.1 2.24 0.85 1.29
br1 1.44 1.8 2.05 1.75 2.25
co1 2.6 2.42 3.17 3.31 3.07
hinxton4 1.03 1.23 1.6 1.28 1.11
IR 1 3.34 2.98 2.79 4.4 3.37
KO1 3.24 3.27 4 3.44 3.18
LaBranaarintero 3.9 3.26 4.75 3.57 3.41
Malta 2.47 2.03 2.16 2.23 1.89
NE 5 1.89 2.05 2.6 2.38 2.13
NE 6 2.48 2.32 2.99 3.48 2.67
NE 7 2.38 2.64 2.71 2.39 2.54
Paleoeskimo 2.58 1.85 1.62 2.85 2.22
gokhem2 0.57 0.43 0.76 1.46 0.88
hinxton 1 0.12 0.09 0.3 0.28 0.12
hinxton 2 0.19 0.31 0.27 0.22 0.71
hinxton 3 0.36 0.24 0.24 0.34 0.64
hinxton 5 0.19 0.14 0.48 0.28 0.47
vi33.16 neanderthal 0 0.12 0.1 0 0.04
vi33.25 neanderthal 0.05 0 0.11 0 0.05
vi33.26 neanderthal 0 0.04 0.19 0 0.15



I would love to know if there are any averages for the above tests, and also if the above samples test higher with one than another in comparison. 


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